CRAN Package Check Results for Package turboEM

Last updated on 2014-07-24 15:52:28.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2012.2-1 1.39 22.10 23.49 NOTE
r-devel-linux-x86_64-debian-gcc 2012.2-1 1.30 22.29 23.60 NOTE
r-devel-linux-x86_64-fedora-clang 2012.2-1 51.72 NOTE
r-devel-linux-x86_64-fedora-gcc 2012.2-1 48.68 NOTE
r-devel-osx-x86_64-clang 2012.2-1 44.14 NOTE
r-devel-windows-ix86+x86_64 2012.2-1 4.00 33.00 37.00 NOTE
r-patched-linux-x86_64 2012.2-1 1.33 22.16 23.49 NOTE
r-patched-solaris-sparc 2012.2-1 255.00 NOTE
r-patched-solaris-x86 2012.2-1 64.80 NOTE
r-release-linux-ix86 2012.2-1 1.66 30.14 31.80 NOTE
r-release-linux-x86_64 2012.2-1 1.21 22.63 23.84 NOTE
r-release-osx-x86_64-mavericks 2012.2-1 NOTE
r-release-osx-x86_64-snowleopard 2012.2-1 NOTE
r-release-windows-ix86+x86_64 2012.2-1 4.00 37.00 41.00 NOTE
r-oldrel-windows-ix86+x86_64 2012.2-1 5.00 137.00 142.00 NOTE

Check Details

Version: 2012.2-1
Check: for hidden files and directories
Result: NOTE
    Found the following hidden files and directories:
     inst/doc/.Rhistory
    These were most likely included in error. See section ‘Package
    structure’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2012.2-1
Check: top-level files
Result: NOTE
    File
     LICENSE
    is not mentioned in the DESCRIPTION file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2012.2-1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘numDeriv’ which was already attached by Depends.
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘foreach’ ‘methods’ ‘quantreg’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2012.2-1
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in ‘inst/doc’:
     ‘turboEM.Rnw’
    A ‘vignettes’ directory is required as from R 3.1.0
    and these will not be indexed nor checked
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 2012.2-1
Check: Rd line widths
Result: NOTE
    Rd file 'internal.Rd':
     \usage lines wider than 90 characters:
     accelerate(par, fixptfn, objfn, method = c("em", "squarem", "pem", "decme", "qn"), boundary = NULL, pconstr = NULL, project = N ... [TRUNCATED]
    
    Rd file 'turbo.Rd':
     \usage lines wider than 90 characters:
     plot(x, which.methods = seq_along(x$method), method.names = x$method[which.methods], xlim, ylim, ...)
     grad(x, objfn=x$objfn, which.methods = seq_along(x$method), method.names = x$method[which.methods], ...)
     hessian(x, objfn=x$objfn, which.methods = seq_along(x$method), method.names = x$method[which.methods], ...)
     stderror(x, objfn=x$objfn, which.methods = seq_along(x$method), method.names = x$method[which.methods], ...)
     \examples lines wider than 100 characters:
     res2 <- turboem(par=p0, y=y, fixptfn=fixptfn, objfn=objfn, method=c("EM", "squarem", "pem", "decme"))
     res1keep <- turboem(par=p0, y=y, fixptfn=fixptfn, objfn=objfn, method=c("EM", "squarem", "pem"), control.run=list(keep.objfval=TRUE))
    
    Rd file 'turboSim.Rd':
     \usage lines wider than 90 characters:
     turboSim(parmat, fixptfn, objfn, method = c("em", "squarem", "pem", "decme", "qn"),
     method.names, keep.pars = FALSE, ..., control.method = replicate(length(method),list()), control.run = list())
    
    Rd file 'turboem.Rd':
     \usage lines wider than 90 characters:
     boundary, pconstr = NULL, project = NULL, parallel = FALSE, ..., control.method = replicate(length(method),list()),
     \examples lines wider than 100 characters:
     # If no objective function is provided, the "squarem" method defaults to Squarem-2 (or if control parameter K > 1, to Cyclem-2). Compar ... [TRUNCATED]
    
    Rd file 'turbosimMethods.Rd':
     \usage lines wider than 90 characters:
     summary(object, which.methods = seq_along(object$method), method.names = object$method.names[which.methods], eps = 0.1, sol = NULL, ... ... [TRUNCATED]
     boxplot(x, which.methods = seq_along(x$method), method.names = x$method.names[which.methods], whichfail = (x$fail | !x$conv)[,which.met ... [TRUNCATED]
     dataprof(x, which.methods = seq_along(x$method), method.names = x$method.names[which.methods], whichfail = (x$fail | !x$conv)[,which.me ... [TRUNCATED]
     pairs(x, which.methods=seq_along(x$method), method.names = x$method.names[which.methods], whichfail = (x$fail | !x$conv)[,which.methods ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2012.2-1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to 'numDeriv' which was already attached by Depends.
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     'foreach' 'methods' 'quantreg'
     These packages need to be imported from for the case when
     this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard

Version: 2012.2-1
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in 'inst/doc':
     'turboEM.Rnw'
    A 'vignettes' directory will be required as from R 3.1.0
Flavor: r-oldrel-windows-ix86+x86_64