CRAN Package Check Results for Package riskRegression

Last updated on 2014-07-30 15:47:45.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.0.8 2.98 32.18 35.16 NOTE
r-devel-linux-x86_64-debian-gcc 0.0.8 3.74 32.14 35.88 NOTE
r-devel-linux-x86_64-fedora-clang 0.0.8 72.42 NOTE
r-devel-linux-x86_64-fedora-gcc 0.0.8 68.37 NOTE
r-devel-osx-x86_64-clang 0.0.8 57.27 NOTE
r-devel-windows-ix86+x86_64 0.0.8 16.00 66.00 82.00 NOTE
r-patched-linux-x86_64 0.0.8 3.75 32.75 36.50 NOTE
r-patched-solaris-sparc 0.0.8 375.70 WARN
r-patched-solaris-x86 0.0.8 92.20 NOTE
r-release-linux-ix86 0.0.8 4.82 41.30 46.12 NOTE
r-release-linux-x86_64 0.0.8 3.92 33.20 37.13 NOTE
r-release-osx-x86_64-mavericks 0.0.8 NOTE
r-release-osx-x86_64-snowleopard 0.0.8 NOTE
r-release-windows-ix86+x86_64 0.0.8 16.00 70.00 86.00 NOTE
r-oldrel-windows-ix86+x86_64 0.0.8 16.00 71.00 87.00 NOTE

Check Details

Version: 0.0.8
Check: DESCRIPTION meta-information
Result: NOTE
    Packages listed in more than one of Depends, Imports, Suggests, Enhances:
     rms cmprsk survival
    A package should be listed in only one of these fields.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.0.8
Check: dependencies in R code
Result: NOTE
    ':::' calls which should be '::':
     prodlim:::SmartControl prodlim:::predictSurvIndividual
     See the note in ?`:::` about the use of this operator.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.0.8
Check: top-level files
Result: NOTE
    Non-standard files/directories found at top level:
     examples prepareData
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.0.8
Check: Rd line widths
Result: NOTE
    Rd file 'CSC.Rd':
     \examples lines wider than 100 characters:
     fit3 <- CSC(list(Hist(time,status)~sex+invasion+epicel+age,Hist(time,status)~invasion+epicel+age),data=Melanoma)
    
    Rd file 'plot.riskRegression.Rd':
     \usage lines wider than 90 characters:
     plot(x, cause,newdata, xlab, ylab, xlim, ylim, lwd, col, lty, axes = TRUE, percent = TRUE, legend=TRUE, add = FALSE, ...)
    
    Rd file 'plotEffects.Rd':
     \usage lines wider than 90 characters:
     plotEffects(x, formula, level, refLine = TRUE, confint = 0.95, xlim, ylim, xlab = "Time", ylab = "Cumulative coefficient", col, lty, lw ... [TRUNCATED]
     \examples lines wider than 100 characters:
     fit.tarr <- ARR(Hist(time,status)~strata(sex)+strata(invasion),data=Melanoma,cause=1,times=seq(800,3000,20))
    
    Rd file 'riskRegression.Rd':
     \examples lines wider than 100 characters:
     fit2a.lrr <- LRR(Hist(time,status)~logthick,data=Melanoma,cause=1,cens.model="cox",cens.formula=~sex+epicel+ulcer+age+logthick)
     x <- pec(list(fit.arr2,fit.arr2a,fit.arr2b,fit.lrr),data=Melanoma,formula=Hist(time,status)~1,cause=1,B=10,splitMethod="none")
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.0.8
Check: whether package can be installed
Result: WARNING
    Found the following significant warnings:
     Warning: replacing previous import by survival::survfit.formula when loading riskRegression
Flavor: r-patched-solaris-sparc