CRAN Package Check Results for Package mvbutils

Last updated on 2014-08-01 14:47:28.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.7.4.1 1.69 41.28 42.97 NOTE
r-devel-linux-x86_64-debian-gcc 2.7.4.1 1.76 41.12 42.88 NOTE
r-devel-linux-x86_64-fedora-clang 2.7.4.1 90.16 NOTE
r-devel-linux-x86_64-fedora-gcc 2.7.4.1 83.67 NOTE
r-devel-osx-x86_64-clang 2.7.4.1 75.97 NOTE
r-devel-windows-ix86+x86_64 2.7.4.1 5.00 59.00 64.00 NOTE
r-patched-linux-x86_64 2.7.4.1 1.65 40.90 42.54 NOTE
r-patched-solaris-sparc 2.7.4.1 510.10 NOTE
r-patched-solaris-x86 2.7.4.1 100.40 NOTE
r-release-linux-ix86 2.7.4.1 2.14 51.02 53.16 NOTE
r-release-linux-x86_64 2.7.4.1 1.72 41.55 43.27 NOTE
r-release-osx-x86_64-mavericks 2.7.4.1 NOTE
r-release-windows-ix86+x86_64 2.7.4.1 5.00 57.00 62.00 NOTE
r-oldrel-windows-ix86+x86_64 2.7.4.1 4.00 60.00 64.00 NOTE

Check Details

Version: 2.7.4.1
Check: dependencies in R code
Result: NOTE
    ':::' calls which should be '::':
     base:::call base:::importIntoEnv base:::lockEnvironment
     base:::match.call base:::print.default base:::print.function
     tools:::Rd2txt utils:::?
     See the note in ?`:::` about the use of this operator.
    Unexported objects imported by ':::' calls:
     tools:::.Rd_get_metadata tools:::.get_package_metadata
     tools:::.install_package_Rd_indices
     tools:::.install_package_Rd_objects
     tools:::.install_package_description
     tools:::.install_package_namespace_info tools:::.read_description
     tools:::.writePkgIndices tools:::.writeVignetteHtmlIndex
     tools:::RdTags tools:::fetchRdDB tools:::makeLazyLoadDB
     tools:::prepare_Rd
     See the note in ?`:::` about the use of this operator.
    There are ::: calls to the package's namespace in its code. A package
     almost never needs to use ::: for its own objects:
     Save body.print.function cd rbind.data.frame
     search.task.trees untetherBalloon
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.7.4.1
Check: R code for possible problems
Result: NOTE
    .onLoad : f: no visible binding for global variable blah
    .onLoad : <local>: no visible binding for global variable package
    .onLoad: no visible binding for global variable tasks
    .onLoad: no visible binding for global variable ROOT
    .onLoad: no visible binding for global variable mvbutils
    FF: no visible binding for global variable w
    FF: no visible binding for global variable mods.in.packages
    FF: no visible binding for global variable mods.in.tasks
    FF: no visible binding for global variable tracees
    FF: no visible binding for global variable mtrace
    Save.pos: no visible global function definition for check.for.tracees
    Save.pos: no visible binding for global variable tracees
    Save.pos: no visible binding for global variable mtrace
    cd: no visible binding for global variable last.warning
    cd: no visible binding for global variable .Traceback
    cd: no visible binding for global variable .Saved.plots
    cd: no visible binding for global variable .
    cd..: no visible binding for global variable execute.Last
    cd..: no visible binding for global variable orig.path
    cd.load: no visible binding for global variable .
    cd.load: no visible binding for global variable execute.First
    cd.write.mvb.tasks: no visible binding for global variable .
    cdfind: no visible binding for global variable .
    cdregexpr: no visible binding for global variable .
    cdtree: no visible binding for global variable .
    cdtree: no visible binding for global variable x
    check.pkg: no visible binding for global variable subdir
    copy.ns.objects : icns : f: no visible binding for global variable
     blah
    create.backups: no visible binding for global variable .
    cull.old.builds: no visible binding for global variable subdir
    cull.old.builds: no visible binding for global variable dir.
    demlazy: no visible binding for global variable .
    discard.mouldering.backups: no visible binding for global variable
     backup.fix
    doc2Rd: no visible binding for global variable .
    doc2Rd: no visible binding for global variable docType
    doc2Rd: no visible binding for global variable author
    dont.save: no visible binding for global variable .SavedPlots
    dont.save: no visible binding for global variable last.warning
    dont.save: no visible binding for global variable .Traceback
    find.and.get: no visible binding for global variable name
    find.and.get: no visible binding for global variable fixing
    find.and.get: no visible binding for global variable tracees
    find.and.get: no visible binding for global variable what
    find.derefs: no visible binding for global variable .
    find.documented : findo: no visible binding for global variable .
    find.web: no visible binding for global variable generics
    find.web: no visible binding for global variable where
    find.web: no visible binding for global variable textcolor
    find.web: no visible binding for global variable prune
    find.web: no visible binding for global variable highlight
    fixr: no visible binding for global variable load.from
    fixr: no visible binding for global variable name.load.from
    fixr: no visible binding for global variable trace.was.on
    fixr: no visible global function definition for mtrace
    fixr: no visible binding for global variable type.load.from
    fixr: no visible binding for global variable package
    fixr: no visible binding for global variable task
    fixr.guts: no visible binding for global variable tracees
    fixr.guts: no visible global function definition for mtrace
    fixup.exports: no visible binding for global variable .
    fixup.help: no visible binding for global variable spath
    fixup.help: no visible binding for global variable ipath
    fixup.help: no visible binding for global variable force.all.docs
    fixup.help: no visible binding for global variable dynamic.help
    fixup.help: no visible binding for global variable pkg
    fixup.help: no visible binding for global variable is.Rd2
    fixup.vignettes: no visible binding for global variable subdir
    fixup.vignettes: no visible binding for global variable ewhere
    fixup.vignettes: no visible binding for global variable pkg
    fixup.vignettes: no visible binding for global variable .
    fixup.vignettes: no visible binding for global variable ipath
    foodweb: no visible binding for global variable level
    foodweb: no visible binding for global variable funmat
    foodweb: no visible binding for global variable x
    get.new.file.numbers: no visible binding for global variable .
    help2flatdoc: no visible binding for global variable .
    help2flatdoc: no visible binding for global variable USAGE
    help2flatdoc: no visible binding for global variable EXAMPLES
    hook.set.already: no visible binding for global variable prepend
    internal.copy.ns.objects : f: no visible binding for global variable
     blah
    load.live.package: no visible binding for '<<-' assignment to
     live.packages
    load.live.package: no visible binding for global variable
     live.packages
    load.maintained.package: no visible binding for global variable
     mvb.session.info
    make.NAMESPACE: no visible binding for global variable .
    methodize.USAGE: no visible binding for global variable overall.name
    mlazy: no visible binding for global variable .
    mlocal: no visible binding for global variable override.answer
    move: no visible binding for global variable .
    move.fix.list: no visible binding for global variable what
    move.fix.list: no visible binding for global variable to
    move.to.mcache: no visible binding for global variable .
    mp.synch: no visible binding for global variable exports.have.changed
    mtidy: no visible binding for global variable .
    mupdate.mcache: no visible binding for global variable .
    mvb.rbind.data.frame: no visible binding for global variable .
    not.for.packaging: no visible binding for global variable tasks
    not.for.packaging: no visible binding for global variable .Traceback
    not.for.packaging: no visible binding for global variable
     last.warning
    not.for.packaging: no visible binding for global variable .SavedPlots
    old.onLoad.stuff: no visible binding for global variable my.reps
    organize.web.display: no visible binding for global variable n
    organize.web.display: no visible binding for global variable funs
    organize.web.display: no visible binding for global variable funmat
    organize.web.display: no visible binding for global variable minstrl
    patch.installed: no visible binding for global variable dir.
    patch.installed: no visible binding for global variable subdir
    pre.install: no visible binding for global variable subdir
    pre.install: no visible binding for global variable dir.
    pre.install: no visible binding for global variable R
    pre.install: no visible binding for global variable man
    pre.install: no visible binding for global variable inst
    pre.install: no visible binding for global variable ewhere
    pre.install : get.nondirs: no visible binding for global variable
     dir.
    pre.install: no visible binding for global variable src
    pre.install: no visible binding for global variable vignettes
    pre.install: no visible binding for global variable exec
    pre.install: no visible binding for global variable tests
    pre.install: no visible binding for global variable .
    pre.install : <anonymous>: no visible binding for global variable
     ewhere
    pre.install: no visible binding for global variable dll.paths
    pre.install: no visible binding for global variable .required
    pre.install: no visible binding for global variable tasks
    pre.install: no visible binding for global variable .Traceback
    pre.install: no visible binding for global variable last.warning
    pre.install: no visible binding for global variable .SavedPlots
    pre.install: no visible binding for global variable task.path
    pre.install: no visible binding for global variable env
    pre.install: no visible binding for global variable ..
    pre.install: no visible binding for global variable exclude.funs
    pre.install: no visible binding for global variable exclude.data
    pre.install : provisionally.add.man.file: no visible binding for global
     variable subdir
    pre.install : Rdconv.internals: no visible binding for global variable
     ewhere
    pre.install: no visible binding for global variable .First.lib
    pre.install: no visible binding for global variable .Last.lib
    pre.install: no visible binding for global variable .onAttach
    rbind.data.frame: no visible binding for global variable .
    rcmdgeneric.pkg: no visible binding for global variable dir.
    rcmdgeneric.pkg: no visible binding for global variable subdir
    rcmdgeneric.pkg: no visible binding for global variable ewhere
    save.mchanged: no visible binding for global variable .
    save.refdb: no visible binding for global variable .
    save.refdb: no visible binding for global variable name
    save.refdb: no visible binding for global variable task.tree
    set.pkg.and.dir: no visible binding for global variable
     character.only
    set.pkg.and.dir: no visible binding for global variable
     dir.above.source
    set.rcmd.vars: no visible binding for global variable sep
    setup.dontruns: no visible binding for global variable .
    setup.mcache: no visible binding for global variable .
    spkg: no visible binding for global variable subdir
    subco: no visible binding for global variable Rd.version
    unpackage: no visible binding for global variable .
    unpackage: no visible binding for global variable CONTENTS
    unpackage: no visible binding for global variable INDEX
    unpackage: no visible binding for global variable MD5
    unpackage: no visible binding for global variable NAMESPACE
    unpackage: no visible binding for global variable ..
    unpackage: no visible binding for global variable src
    unpackage: no visible binding for global variable chtml
    unpackage: no visible binding for global variable html
    unpackage: no visible binding for global variable latex
    unpackage: no visible binding for global variable meta
    unpackage: no visible binding for global variable R
    unpackage: no visible binding for global variable libs
    update.loaded.pkg: no visible binding for global variable doc
    update.loaded.pkg: no visible binding for global variable export.me
    write.sourceable.function: no visible binding for global variable
     bug.position
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.7.4.1
Check: Rd line widths
Result: NOTE
    Rd file 'doc2Rd.Rd':
     \usage lines wider than 90 characters:
     doc2Rd( text, file=NULL, append=, warnings.on=TRUE, Rd.version=, def.valids=NULL, check.legality=TRUE)
     \examples lines wider than 100 characters:
     sample.fun <- source.mvb( system.file( file.path( 'demostuff', 'sample.fun.rrr'), package='mvbutils'))
    
    Rd file 'fast.read.fwf.Rd':
     \usage lines wider than 90 characters:
     fast.read.fwf(file, width, col.names = if (!is.null(colClasses)) names(colClasses) else "V" %&% 1:ncol(fields), colClasses = character ... [TRUNCATED]
    
    Rd file 'fixr.Rd':
     \usage lines wider than 90 characters:
     fixr( x, new=FALSE, install=FALSE, what, fixing, pkg=NULL, character.only=FALSE, new.doc=FALSE)
     FF() # manual check and update, usually only needed temporarily if autoedit() stops working
    
    Rd file 'foodweb.Rd':
     \usage lines wider than 90 characters:
     foodweb( funs, where=1, charlim=80, prune=character(0), rprune, ancestors=TRUE, descendents=TRUE, plotting =TRUE, plotmath=FALSE, gener ... [TRUNCATED]
     plot(x, textcolor, boxcolor, xblank, border, textargs = list(), use.centres = TRUE, color.lines = TRUE, poly.args = list(), expand.xbox ... [TRUNCATED]
    
    Rd file 'install.pkg.Rd':
     \usage lines wider than 90 characters:
     install.pkg( pkg, character.only=FALSE, dir.above.source='+', lib=.libPaths()[1], flags=character(0), intern=TRUE)
     build.pkg( pkg, character.only=FALSE, dir.above.source='+', flags=character(0), intern=TRUE)
     build.pkg.binary( pkg, character.only=FALSE, dir.above.source='+', flags=character(0), intern=TRUE)
     check.pkg( pkg, character.only=FALSE, dir.above.source='+', build.flags=character(0), check.flags=character( 0),
     set.rcmd.vars( ...) # not yet implemented. If you need to set env vars eg PATH for R CMD to work, you have to do so yourself; see *De ... [TRUNCATED]
    
    Rd file 'local.on.exit.Rd':
     \usage lines wider than 90 characters:
     # Inside an 'mlocal' function of the form function( <<args>>, nlocal=sys.parent(), <<temp.params>>) mlocal({ <<code>> })
    
    Rd file 'maintain.packages.Rd':
     \usage lines wider than 90 characters:
     # E.g. in your .First, after library( mvbutils), or in a '.First.task' above yr task-package
    
    Rd file 'move.Rd':
     \usage lines wider than 90 characters:
     # Use 'what' arg to move several objects at once, e.g. move( what=c( "thing1", "thing2"), <<etc>>)
    
    Rd file 'multirep.Rd':
     \examples lines wider than 100 characters:
     multirep( cq( the, cat, sat, on, the, mat), c( 2, 6), list( cq( big, bug), cq( elephant, howdah, cushion)))
    
    Rd file 'mvbutils.operators.Rd':
     \examples lines wider than 100 characters:
     c( "cat", "hat", "dog", "brick") %that.match% c( "at", "ic") # cat hat brick; synonym for '%matching%'
     c( "cat", "hat", "dog", "brick") %that.dont.match% c( "at", "ic") # dog; like '%except%' but for regexps
    
    Rd file 'pre.install.Rd':
     \usage lines wider than 90 characters:
     patch.installed( pkg, character.only=FALSE, force.all.docs=FALSE, help.patch=TRUE, DLLs.only=FALSE,
    
    Rd file 'print.Rd':
     \examples lines wider than 100 characters:
     # Special methods shown below; basic behaviour of 'print', 'print.default', and 'print.function' is as for base-R
    
    Rd file 'rbdf.Rd':
     \usage lines wider than 90 characters:
     rbdf(..., deparse.level = 1) # explicitly call S3 method for data frames (circumvent rbind dispatch)
     \examples lines wider than 100 characters:
     #evalq( rbind( data.frame( x=1, y=2, z=3), c( x=4, y=5)), baseenv()) # NB gained element! Try predicting z[2]...
    
    Rd file 'source.mvb.Rd':
     \usage lines wider than 90 characters:
     # Use "from.here" only inside "read.table", like so: read.table( file=from.here( EOF=), ...)
    
    Rd file 'write.sourceable.function.Rd':
     \usage lines wider than 90 characters:
     write.sourceable.function( x, con, append=FALSE, print.name=FALSE, doc.special=TRUE, xn=NULL)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc