CRAN Package Check Results for Package lme4

Last updated on 2017-08-16 21:47:51.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-13 55.64 533.35 588.98 OK
r-devel-linux-x86_64-debian-gcc 1.1-13 57.19 530.96 588.15 OK
r-devel-linux-x86_64-fedora-clang 1.1-13 1245.37 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1-13 1228.94 NOTE
r-devel-windows-ix86+x86_64 1.1-13 148.00 1450.00 1598.00 ERROR
r-patched-linux-x86_64 1.1-13 56.24 528.14 584.37 OK
r-patched-solaris-x86 1.1-13 1346.30 NOTE
r-release-linux-x86_64 1.1-13 56.93 528.91 585.84 OK
r-release-windows-ix86+x86_64 1.1-13 172.00 0.00 172.00 FAIL
r-release-osx-x86_64 1.1-13 NOTE
r-oldrel-windows-ix86+x86_64 1.1-13 137.00 1162.00 1299.00 NOTE
r-oldrel-osx-x86_64 1.1-13 NOTE

Additional issues

gcc-UBSAN

Check Details

Version: 1.1-13
Check: installed package size
Result: NOTE
     installed size is 27.0Mb
     sub-directories of 1Mb or more:
     doc 1.5Mb
     libs 21.9Mb
     testdata 1.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.1-13
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'AAAtest-all.R' [177s]
     Running 'HSAURtrees.R' [3s]
     Running 'REMLdev.R' [3s]
     Running 'ST.R' [3s]
     Running 'agridat_gotway.R' [5s]
     Running 'bootMer.R' [15s]
     Running 'boundary.R' [12s]
     Running 'condVar.R' [4s]
     Running 'confint.R' [5s]
     Running 'devCritFun.R' [3s]
     Running 'devfunQ.R' [5s]
     Running 'drop.R' [5s]
     Running 'drop1contrasts.R' [4s]
     Running 'dynload.R' [0s]
     Running 'elston.R' [4s]
     Running 'evalCall.R' [4s]
     Running 'extras.R' [2s]
     Running 'falsezero_dorie.R' [2s]
     Running 'fewlevels.R' [17s]
     Running 'getME.R' [4s]
     Running 'glmer-1.R' [5s]
     Running 'glmerControlPass.R' [16s]
     Running 'glmerWarn.R' [4s]
     Running 'glmmExt.R' [13s]
     Running 'glmmWeights.R' [11s]
     Running 'hatvalues.R' [3s]
     Running 'is.R' [4s]
     Running 'lmList-tst.R' [6s]
     Running 'lme4_nlme.R' [3s]
     Running 'lmer-0.R' [5s]
     Running 'lmer-1.R' [6s]
     Comparing 'lmer-1.Rout' to 'lmer-1.Rout.save' ... OK
     Running 'lmer-conv.R' [4s]
     Running 'lmer2_ex.R' [2s]
     Running 'methods.R' [3s]
     Running 'minval.R' [3s]
     Running 'modFormula.R' [4s]
     Running 'nbinom.R' [2s]
     Running 'nlmer-conv.R' [2s]
     Running 'nlmer.R' [3s]
     Comparing 'nlmer.Rout' to 'nlmer.Rout.save' ... OK
     Running 'offset.R' [6s]
     Running 'optimizer.R' [6s]
     Running 'polytomous.R' [2s]
     Running 'prLogistic.R' [2s]
     Running 'predict.R' [4s]
     Running 'predict_basis.R' [5s]
     Running 'predsim.R' [5s]
     Running 'priorWeights.R' [10s]
     Running 'priorWeightsModComp.R' [3s]
     Running 'profile-tst.R' [39s]
     Running 'refit.R' [30s]
     Running 'resids.R' [4s]
     Running 'respiratory.R' [11s]
     Running 'simulate.R' [8s]
     Running 'testOptControl.R' [2s]
     Running 'test_times.R' [3s]
     Running 'testcolonizer.R' [4s]
     Running 'testcrab.R' [11s]
     Running 'throw.R' [7s]
     Running 'utils.R' [0s]
     Running 'varcorr.R' [5s]
     Running 'vcov-etc.R' [4s]
    Running the tests in 'tests/AAAtest-all.R' failed.
    Last 13 lines of output:
     + cat( "package 'testthat' not available, cannot run unit tests\n" )
     + }
     1. Failure: glmer (@test-glmer.R#141) ------------------------------------------
     unname(fixef(mod)) not equal to c(0.5425528, 6.4289962).
     2/2 mismatches (average diff: 1.31e-05)
     [1] 0.543 - 0.543 == 2.33e-06
     [2] 6.429 - 6.429 == -2.40e-05
    
    
     testthat results ================================================================
     OK: 704 SKIPPED: 0 FAILED: 1
     1. Failure: glmer (@test-glmer.R#141)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.1-13
Check: running tests for arch ‘x64’
Result: FAIL
    Check process probably crashed or hung up for 20 minutes ... killed
    Most likely this happened in the example checks (?),
    if not, ignore the following last lines of example output:
    
    ======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-release-windows-ix86+x86_64

Version: 1.1-13
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
     input string 785 is invalid in this locale
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'lmer.tex' failed.
    LaTeX errors:
    ! Undefined control sequence.
    l.15 x<9c><ed>\Mh
     ^^TK^^P<ae><97>(q$<ee>؈!.L6^^L/($oYX^^Hx^^H<eb>!<a0>'o<de><<eb>ٓ^^A/<a2>O<f0>]ċ^^G<f5>^^]<84><e7>A...
    The control sequence at the end of the top line
    of your error message was never \def'ed. If you have
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Missing $ inserted.
    <inserted text>
     $
    l.16 ...F<a0><ba>v<ed>Zggg<ad>V{<fd><fa>5^^Q9<8e>388866<a6><94><8a><e3>^^X<fd>^^]<c7><c1><83><ae>^
     <bd><9a>J<a5>l<db>v^^\^^G<9f>J<a9><87>^^O^^_<c6>q|...
    ! Extra }, or forgotten $.
    l.17 Ԓ<da>[}
     <b8>ӄ<f6><a0><9c>0^^L<89>(<9b><cd><e2>^^A<98><ce>0^^L<0b><85>^^BOm<b9>\^^^^^Z^^Z<8a><a2><88><a7>?<9b><cd>"@a<ce>0<8e>eYP{<a1>P<c0>O<<c8><e3>...
    I've deleted a group-closing
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-oldrel-osx-x86_64