CRAN Package Check Results for Package lme4

Last updated on 2017-02-21 23:50:50.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-12 48.29 496.33 544.61 WARN
r-devel-linux-x86_64-debian-gcc 1.1-12 48.53 485.13 533.66 WARN
r-devel-linux-x86_64-fedora-clang 1.1-12 1135.05 WARN --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 1.1-12 1118.52 WARN --no-stop-on-test-error
r-devel-macos-x86_64-clang 1.1-12 744.27 WARN --no-stop-on-test-error
r-devel-windows-ix86+x86_64 1.1-12 190.00 1474.00 1664.00 ERROR
r-patched-linux-x86_64 1.1-12 41.93 423.98 465.91 OK
r-patched-solaris-sparc 1.1-12 5318.00 NOTE
r-patched-solaris-x86 1.1-12 908.50 NOTE
r-release-linux-x86_64 1.1-12 41.67 417.31 458.98 OK
r-release-osx-x86_64-mavericks 1.1-12 NOTE
r-release-windows-ix86+x86_64 1.1-12 239.00 1373.00 1612.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1-12 162.00 0.00 162.00 FAIL

Memtest notes: gcc6-UBSAN gcc6-UBSAN gcc7-UBSAN gcc7-UBSAN

Check Details

Version: 1.1-12
Check: files in ‘vignettes’
Result: WARN
    Files in the 'vignettes' directory newer than all files in 'inst/doc':
     ‘lmer.R’, ‘lmer.Rnw’
    Files in the 'vignettes' directory newer than same file in 'inst/doc':
     ‘PLSvGLS.Rnw’, ‘Theory.Rnw’, ‘lmerperf.Rmd’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64

Version: 1.1-12
Flags: --no-stop-on-test-error
Check: installed package size
Result: NOTE
     installed size is 24.0Mb
     sub-directories of 1Mb or more:
     doc 1.8Mb
     libs 18.7Mb
     testdata 1.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 1.1-12
Flags: --no-stop-on-test-error
Check: files in ‘vignettes’
Result: WARN
    Files in the 'vignettes' directory newer than all files in 'inst/doc':
     ‘lmer.R’, ‘lmer.Rnw’
    Files in the 'vignettes' directory newer than same file in 'inst/doc':
     ‘PLSvGLS.Rnw’, ‘Theory.Rnw’, ‘lmerperf.Rmd’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 1.1-12
Check: installed package size
Result: NOTE
     installed size is 7.3Mb
     sub-directories of 1Mb or more:
     doc 1.8Mb
     libs 2.1Mb
     testdata 1.5Mb
Flavors: r-devel-windows-ix86+x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1-12
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'AAAtest-all.R' [148s]
     Running 'HSAURtrees.R' [6s]
     Running 'REMLdev.R' [6s]
     Running 'ST.R' [5s]
     Running 'agridat_gotway.R' [11s]
    Running the tests in 'tests/agridat_gotway.R' failed.
    Last 13 lines of output:
     [1] 287.369138 741.680806 12.677227 8.345542 69.442034
     [6] 40.398259 0.703201 134.231874 77.377945 12182.630252
     [11] 77.000297 237.128460 16.983415 55.160677 193.336267
     [16] 46.562474 30.012926
     > ## bobyqa gets gradients *at least* 1.64* lower
     >
     > lme4fit <- list(fixef=fixef(m1),theta=getME(m1,"theta"))
     >
     > ## hack around slight naming differences
     > lme4fit$theta <- unname(lme4fit$theta)
     > lme4.0fit$theta <- unname(lme4.0fit$theta)
     > stopifnot(all.equal(lme4fit, lme4.0fit, tolerance = 3e-4))
     Error: lme4fit and lme4.0fit are not equal:
     Component "theta": Mean relative difference: 0.000469576
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.1-12
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
     input string 785 is invalid in this locale
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'lmer.tex' failed.
    LaTeX errors:
    ! Undefined control sequence.
    l.15 x<9c><ed>\Mh
     ^^TK^^P<ae><97>(q$<ee>؈!.L6^^L/($oYX^^Hx^^H<eb>!<a0>'o<de><<eb>ٓ^^A/<a2>O<f0>]ċ^^G<f5>^^]<84><e7>A...
    The control sequence at the end of the top line
    of your error message was never \def'ed. If you have
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Missing $ inserted.
    <inserted text>
     $
    l.16 ...F<a0><ba>v<ed>Zggg<ad>V{<fd><fa>5^^Q9<8e>388866<a6><94><8a><e3>^^X<fd>^^]<c7><c1><83><ae>^
     <bd><9a>J<a5>l<db>v^^\^^G<9f>J<a9><87>^^O^^_<c6>q|...
    ! Extra }, or forgotten $.
    l.17 Ԓ<da>[}
     <b8>ӄ<f6><a0><9c>0^^L<89>(<9b><cd><e2>^^A<98><ce>0^^L<0b><85>^^BOm<b9>\^^^^^Z^^Z<8a><a2><88><a7>?<9b><cd>"@a<ce>0<8e>eYP{<a1>P<c0>O<<c8><e3>...
    I've deleted a group-closing
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 1.1-12
Check: PDF version of manual
Result: FAIL
    Check process probably crashed or hung up for 20 minutes ... killed
    Most likely this happened in the example checks (?),
    if not, ignore the following last lines of example output:
    
    ======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-oldrel-windows-ix86+x86_64