CRAN Package Check Results for Package bayesMCClust

Last updated on 2015-03-28 19:49:58.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 1.50 34.25 35.75 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 1.88 33.86 35.75 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 68.87 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 64.21 NOTE
r-devel-osx-x86_64-clang 1.0 71.92 NOTE
r-prerel-windows-ix86+x86_64 1.0 6.00 57.00 63.00 NOTE
r-prerel-linux-x86_64 1.0 1.27 33.88 35.15 NOTE
r-prerel-solaris-sparc 1.0 463.50 NOTE
r-prerel-solaris-x86 1.0 83.90 NOTE
r-release-linux-x86_64 1.0 1.90 40.57 42.47 NOTE
r-release-osx-x86_64-mavericks 1.0 NOTE
r-release-osx-x86_64-snowleopard 1.0 NOTE
r-release-windows-ix86+x86_64 1.0 7.00 64.00 71.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 8.00 108.00 116.00 NOTE

Check Details

Version: 1.0
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘gplots’ ‘xtable’ ‘mnormt’ ‘MASS’ ‘bayesm’ ‘boa’ ‘e1071’ ‘gtools’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-prerel-windows-ix86+x86_64, r-prerel-linux-x86_64, r-prerel-solaris-sparc, r-prerel-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 1.0
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘MASS’ ‘bayesm’ ‘boa’ ‘e1071’ ‘gplots’ ‘gtools’ ‘mnormt’ ‘xtable’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-prerel-windows-ix86+x86_64, r-prerel-linux-x86_64, r-prerel-solaris-sparc, r-prerel-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    calcMSCritDMC: warning in ls(all = TRUE): partial argument match of
     ‘all’ to ‘all.names’
    calcMSCritDMCExt: warning in ls(all = TRUE): partial argument match of
     ‘all’ to ‘all.names’
    calcMSCritMCC: warning in ls(all = TRUE): partial argument match of
     ‘all’ to ‘all.names’
    calcMSCritMCCExt: warning in ls(all = TRUE): partial argument match of
     ‘all’ to ‘all.names’
    MNLAuxMix: no visible global function definition for ‘mvrnorm’
    calcEntropy: no visible global function definition for ‘xtable’
    calcEquiDist: no visible global function definition for ‘xtable’
    calcEquiDist: no visible global function definition for ‘barplot2’
    calcLongRunDist: no visible global function definition for ‘barplot2’
    calcLongRunDist: no visible global function definition for ‘xtable’
    calcMSCritMCCExt: no visible global function definition for ‘rmnorm’
    calcMSCritMCCExt: no visible global function definition for ‘dmnorm’
    calcNumEff : <anonymous>: no visible global function definition for
     ‘numEff’
    calcNumEff: no visible global function definition for ‘xtable’
    calcParMatDMC: no visible global function definition for ‘xtable’
    calcRegCoeffs: no visible binding for global variable ‘boa.hpd’
    calcRegCoeffs: no visible global function definition for ‘xtable’
    calcSegmentationPower: no visible global function definition for
     ‘xtable’
    calcTransProbs: no visible global function definition for ‘xtable’
    calcVariationDMC: no visible global function definition for ‘xtable’
    dmClust: no visible global function definition for ‘ddirichlet’
    dmClustExtended: no visible global function definition for ‘mvrnorm’
    mcClust : dirDensFun: no visible global function definition for
     ‘ddirichlet’
    mcClust: no visible global function definition for ‘ddirichlet’
    mcClustExtended : dirDensFun: no visible global function definition for
     ‘ddirichlet’
    mcClustExtended: no visible global function definition for ‘mvrnorm’
    plotTransProbs : <anonymous>: no visible global function definition for
     ‘balloonplot’
    plotTransProbs: no visible global function definition for ‘balloonplot’
    plotTransProbs: no visible global function definition for ‘xtable’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-prerel-windows-ix86+x86_64, r-prerel-linux-x86_64, r-prerel-solaris-sparc, r-prerel-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'MNLAuxMix.Rd':
     \examples lines wider than 100 characters:
     X = cbind( intercept=1, alrateBezNew, unskilled, skilled, angStart ) ),
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-prerel-linux-x86_64, r-release-linux-x86_64

Version: 1.0
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘MASS’ ‘bayesm’ ‘boa’ ‘e1071’ ‘gplots’ ‘gtools’ ‘mnormt’ ‘xtable’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-release-osx-x86_64-mavericks, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    calcMSCritDMC: warning in ls(all = TRUE): partial argument match of
     'all' to 'all.names'
    calcMSCritDMCExt: warning in ls(all = TRUE): partial argument match of
     'all' to 'all.names'
    calcMSCritMCC: warning in ls(all = TRUE): partial argument match of
     'all' to 'all.names'
    calcMSCritMCCExt: warning in ls(all = TRUE): partial argument match of
     'all' to 'all.names'
Flavors: r-release-osx-x86_64-snowleopard, r-oldrel-windows-ix86+x86_64