CRAN Package Check Results for Package SuperLearner

Last updated on 2015-03-05 16:47:10.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0-15 0.83 20.48 21.30 NOTE
r-devel-linux-x86_64-debian-gcc 2.0-15 0.76 19.88 20.64 NOTE
r-devel-linux-x86_64-fedora-clang 2.0-15 40.57 NOTE
r-devel-linux-x86_64-fedora-gcc 2.0-15 38.08 NOTE
r-devel-osx-x86_64-clang 2.0-15 43.78 NOTE
r-devel-windows-ix86+x86_64 2.0-15 3.00 31.00 34.00 NOTE
r-patched-linux-x86_64 2.0-15 0.88 23.12 24.00 NOTE
r-patched-solaris-sparc 2.0-15 295.20 NOTE
r-patched-solaris-x86 2.0-15 63.10 NOTE
r-release-linux-ix86 2.0-15 1.29 31.36 32.65 NOTE
r-release-linux-x86_64 2.0-15 0.86 22.76 23.62 NOTE
r-release-osx-x86_64-mavericks 2.0-15 NOTE
r-release-osx-x86_64-snowleopard 2.0-15 OK
r-release-windows-ix86+x86_64 2.0-15 4.00 42.00 46.00 NOTE
r-oldrel-windows-ix86+x86_64 2.0-15 4.00 55.00 59.00 OK

Check Details

Version: 2.0-15
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘ROCR’ ‘cvAUC’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 2.0-15
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     predict.SL.bayesglm predict.SL.caret predict.SL.cforest
     predict.SL.earth predict.SL.gam predict.SL.gbm predict.SL.glm
     predict.SL.glmnet predict.SL.ipredbagg predict.SL.knn
     predict.SL.leekasso predict.SL.loess predict.SL.logreg
     predict.SL.mean predict.SL.nnet predict.SL.polymars
     predict.SL.randomForest predict.SL.ridge predict.SL.rpart
     predict.SL.step predict.SL.stepAIC predict.SL.svm predict.SL.template
     print.summary.CV.SuperLearner
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 2.0-15
Check: R code for possible problems
Result: NOTE
    CV.SuperLearner: no visible global function definition for ‘mclapply’
    CV.SuperLearner: no visible global function definition for ‘parLapply’
    SL.bayesglm: no visible global function definition for ‘bayesglm’
    SL.caret: no visible global function definition for ‘trainControl’
    SL.cforest: no visible global function definition for ‘cforest’
    SL.cforest: no visible global function definition for
     ‘cforest_unbiased’
    SL.gbm: no visible global function definition for ‘gbm’
    SL.gbm: no visible global function definition for ‘gbm.perf’
    SL.glmnet: no visible global function definition for ‘cv.glmnet’
    SL.ipredbagg: no visible global function definition for ‘rpart.control’
    SL.ipredbagg: no visible global function definition for ‘ipredbagg’
    SL.knn: no visible global function definition for ‘knn’
    SL.leekasso: no visible global function definition for ‘f.pvalue’
    SL.logreg: no visible global function definition for ‘logreg’
    SL.nnet: no visible global function definition for ‘nnet’
    SL.polymars: no visible global function definition for ‘polymars’
    SL.polymars: no visible global function definition for ‘polyclass’
    SL.polymars: no visible global function definition for ‘ppolyclass’
    SL.randomForest: no visible global function definition for
     ‘randomForest’
    SL.ridge: no visible global function definition for ‘lm.ridge’
    SL.rpart: no visible global function definition for ‘rpart’
    SL.rpart: no visible global function definition for ‘rpart.control’
    SL.rpartPrune: no visible global function definition for ‘rpart’
    SL.rpartPrune: no visible global function definition for
     ‘rpart.control’
    SL.rpartPrune: no visible global function definition for ‘prune’
    SL.stepAIC: no visible global function definition for ‘stepAIC’
    SL.svm: no visible global function definition for ‘svm’
    mcSuperLearner: no visible global function definition for ‘mclapply’
    method.AUC : <anonymous> : .cvRisk_AUC: no visible global function
     definition for ‘cvAUC’
    method.AUC : <anonymous> : <anonymous>: no visible global function
     definition for ‘cvAUC’
    method.CC_LS : computeCoef : compute: no visible global function
     definition for ‘solve.QP’
    method.CC_nloglik : computeCoef: no visible global function definition
     for ‘nloptr’
    method.NNLS2 : <anonymous> : .NNLS: no visible global function
     definition for ‘solve.QP’
    plot.CV.SuperLearner: no visible global function definition for
     ‘dotplot’
    plot.CV.SuperLearner : <anonymous>: no visible global function
     definition for ‘panel.xyplot’
    plot.CV.SuperLearner : <anonymous>: no visible global function
     definition for ‘panel.segments’
    plot.CV.SuperLearner: no visible global function definition for
     ‘ggplot’
    plot.CV.SuperLearner: no visible global function definition for
     ‘aes_string’
    plot.CV.SuperLearner: no visible global function definition for
     ‘geom_pointrange’
    plot.CV.SuperLearner: no visible global function definition for
     ‘coord_flip’
    plot.CV.SuperLearner: no visible global function definition for ‘ylab’
    plot.CV.SuperLearner: no visible global function definition for ‘xlab’
    predict.SL.knn: no visible global function definition for ‘knn’
    predict.SL.polymars: no visible global function definition for
     ‘ppolyclass’
    screen.SIS: no visible global function definition for ‘SIS’
    screen.glmnet: no visible global function definition for ‘cv.glmnet’
    screen.randomForest: no visible global function definition for
     ‘randomForest’
    screen.ttest: no visible global function definition for ‘colttests’
    snowSuperLearner: no visible global function definition for ‘parLapply’
    snowSuperLearner: no visible global function definition for ‘parSapply’
    summary.CV.SuperLearner: no visible global function definition for
     ‘cvAUC’
    summary.CV.SuperLearner : <anonymous>: no visible global function
     definition for ‘cvAUC’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 2.0-15
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘genefilter’
Flavor: r-release-osx-x86_64-mavericks