CRAN Package Check Results for Package MetaQC

Last updated on 2014-10-24 16:46:48.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.13 1.05 13.87 14.92 NOTE
r-devel-linux-x86_64-debian-gcc 0.1.13 0.84 14.06 14.90 NOTE
r-devel-linux-x86_64-fedora-clang 0.1.13 29.00 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1.13 26.39 NOTE
r-devel-osx-x86_64-clang 0.1.13 32.16 NOTE
r-devel-windows-ix86+x86_64 0.1.13 3.00 23.00 26.00 NOTE
r-patched-linux-x86_64 0.1.13 0.88 14.31 15.18 NOTE
r-patched-solaris-sparc 0.1.13 162.40 NOTE
r-patched-solaris-x86 0.1.13 40.10 NOTE
r-release-linux-ix86 0.1.13 1.28 20.83 22.11 NOTE
r-release-linux-x86_64 0.1.13 0.85 14.27 15.12 NOTE
r-release-osx-x86_64-mavericks 0.1.13 NOTE
r-release-osx-x86_64-snowleopard 0.1.13 NOTE
r-release-windows-ix86+x86_64 0.1.13 3.00 25.00 28.00 NOTE
r-oldrel-windows-ix86+x86_64 0.1.13 4.00 27.00 31.00 NOTE

Check Details

Version: 0.1.13
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘foreach’ ‘iterators’ ‘proto’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1.13
Check: R code for possible problems
Result: NOTE
    GMT2List: no visible global function definition for ‘%dopar%’
    GMT2List: no visible global function definition for ‘foreach’
    GMT2List: no visible global function definition for ‘iter’
    GMT2List: no visible binding for global variable ‘x’
    GetPVal : <anonymous>: no visible global function definition for
     ‘coxph’
    MetaQC: no visible global function definition for ‘proto’
    MetaQC: no visible global function definition for ‘registerDoMC’
    MetaQC: no visible global function definition for ‘registerDoSNOW’
    MetaQC: no visible global function definition for ‘makeCluster’
    MetaQC : .Initialize: no visible global function definition for ‘%do%’
    MetaQC : .Initialize: no visible global function definition for
     ‘foreach’
    MetaQC : .Initialize: no visible global function definition for ‘iter’
    MetaQC : .FilterGenes: no visible global function definition for
     ‘%dopar%’
    MetaQC : .FilterGenes: no visible global function definition for
     ‘foreach’
    MetaQC : .FilterGenes: no visible global function definition for ‘iter’
    MetaQC : .FilterGenes: no visible binding for global variable ‘d’
    MetaQC : .ConvertToGeneSetIdx: no visible global function definition
     for ‘%dopar%’
    MetaQC : .ConvertToGeneSetIdx: no visible global function definition
     for ‘foreach’
    MetaQC : .ConvertToGeneSetIdx: no visible global function definition
     for ‘iter’
    MetaQC : .ConvertToGeneSetIdx: no visible global function definition
     for ‘%do%’
    MetaQC : .ConvertToGeneSetIdx: no visible binding for global variable
     ‘g’
    MetaQC : .ConvertToGeneSetIdx: no visible binding for global variable
     ‘d’
    MetaQC : .CalcPval: no visible global function definition for ‘%do%’
    MetaQC : .CalcPval: no visible global function definition for ‘foreach’
    MetaQC : .CalcPval: no visible binding for global variable ‘i’
    MetaQC : .CalcPval: no visible global function definition for ‘%dopar%’
    MetaQC : .CalcPval: no visible binding for global variable ‘w’
    MetaQC : .CalcPval: no visible global function definition for ‘iter’
    MetaQC : .CalcPval: no visible binding for global variable ‘j’
    MetaQC : .CalcPval: no visible binding for global variable ‘b’
    MetaQC : EQC: no visible global function definition for ‘%do%’
    MetaQC : EQC: no visible global function definition for ‘foreach’
    MetaQC : EQC: no visible global function definition for ‘%dopar%’
    MetaQC : EQC: no visible global function definition for ‘iter’
    MetaQC : EQC: no visible binding for global variable ‘g’
    MetaQC : EQC: no visible binding for global variable ‘w’
    MetaQC : AQCg: no visible global function definition for ‘%dopar%’
    MetaQC : AQCg: no visible global function definition for ‘foreach’
    MetaQC : AQCg: no visible binding for global variable ‘i’
    MetaQC : AQCp: no visible global function definition for ‘%dopar%’
    MetaQC : AQCp: no visible global function definition for ‘foreach’
    MetaQC : AQCp: no visible binding for global variable ‘i’
    MetaQC : CQCg: no visible global function definition for ‘%dopar%’
    MetaQC : CQCg: no visible global function definition for ‘foreach’
    MetaQC : CQCg: no visible global function definition for ‘iter’
    MetaQC : CQCg: no visible binding for global variable ‘dat’
    MetaQC : CQCg: no visible binding for global variable ‘pv’
    MetaQC : CQCg: no visible binding for global variable ‘i’
    MetaQC : CQCp: no visible global function definition for ‘%dopar%’
    MetaQC : CQCp: no visible global function definition for ‘foreach’
    MetaQC : CQCp: no visible global function definition for ‘iter’
    MetaQC : CQCp: no visible binding for global variable ‘dat’
    MetaQC : CQCp: no visible binding for global variable ‘pv’
    MetaQC : CQCp: no visible global function definition for ‘%do%’
    MetaQC : CQCp: no visible binding for global variable ‘ii’
    MetaQC : CQCp: no visible binding for global variable ‘jj’
    MetaQC : CQCp: no visible binding for global variable ‘i’
    MetaQC : IQC: no visible global function definition for ‘%dopar%’
    MetaQC : IQC: no visible global function definition for ‘foreach’
    MetaQC : IQC: no visible binding for global variable ‘i’
    MetaQC : .CalcDistOfStudies: no visible global function definition for
     ‘%dopar%’
    MetaQC : .CalcDistOfStudies: no visible global function definition for
     ‘foreach’
    MetaQC : .CalcDistOfStudies: no visible global function definition for
     ‘iter’
    MetaQC : .CalcDistOfStudies: no visible binding for global variable
     ‘ii’
    MetaQC : .CalcDistOfStudies: no visible global function definition for
     ‘%do%’
    MetaQC : .CalcDistOfStudies: no visible binding for global variable
     ‘jj’
    MetaQC : .CalcScores: no visible global function definition for ‘%do%’
    MetaQC : .CalcScores: no visible global function definition for
     ‘foreach’
    MetaQC : .CalcScores: no visible global function definition for ‘iter’
    MetaQC : .CalcScores: no visible binding for global variable ‘d’
    requireAll: no visible binding for global variable ‘biocLite’
    requireAll: no visible global function definition for ‘biocLite’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 0.1.13
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'doMC'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1.13
Check: R code for possible problems
Result: NOTE
    GMT2List: no visible binding for global variable ‘x’
    MetaQC : .FilterGenes: no visible binding for global variable ‘d’
    MetaQC : .ConvertToGeneSetIdx: no visible binding for global variable
     ‘g’
    MetaQC : .ConvertToGeneSetIdx: no visible binding for global variable
     ‘d’
    MetaQC : .CalcPval: no visible binding for global variable ‘i’
    MetaQC : .CalcPval: no visible binding for global variable ‘w’
    MetaQC : .CalcPval: no visible binding for global variable ‘j’
    MetaQC : .CalcPval: no visible binding for global variable ‘b’
    MetaQC : EQC: no visible binding for global variable ‘g’
    MetaQC : EQC: no visible binding for global variable ‘w’
    MetaQC : AQCg: no visible binding for global variable ‘i’
    MetaQC : AQCp: no visible binding for global variable ‘i’
    MetaQC : CQCg: no visible binding for global variable ‘dat’
    MetaQC : CQCg: no visible binding for global variable ‘pv’
    MetaQC : CQCg: no visible binding for global variable ‘i’
    MetaQC : CQCp: no visible binding for global variable ‘dat’
    MetaQC : CQCp: no visible binding for global variable ‘pv’
    MetaQC : CQCp: no visible binding for global variable ‘ii’
    MetaQC : CQCp: no visible binding for global variable ‘jj’
    MetaQC : CQCp: no visible binding for global variable ‘i’
    MetaQC : IQC: no visible binding for global variable ‘i’
    MetaQC : .CalcDistOfStudies: no visible binding for global variable
     ‘ii’
    MetaQC : .CalcDistOfStudies: no visible binding for global variable
     ‘jj’
    MetaQC : .CalcScores: no visible binding for global variable ‘d’
    requireAll: no visible binding for global variable ‘biocLite’
    requireAll: no visible global function definition for ‘biocLite’
Flavors: r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 0.1.13
Check: R code for possible problems
Result: NOTE
    GMT2List: no visible binding for global variable 'x'
    MetaQC: no visible global function definition for 'registerDoMC'
    MetaQC : .FilterGenes: no visible binding for global variable 'd'
    MetaQC : .ConvertToGeneSetIdx: no visible binding for global variable
     'g'
    MetaQC : .ConvertToGeneSetIdx: no visible binding for global variable
     'd'
    MetaQC : .CalcPval: no visible binding for global variable 'i'
    MetaQC : .CalcPval: no visible binding for global variable 'w'
    MetaQC : .CalcPval: no visible binding for global variable 'j'
    MetaQC : .CalcPval: no visible binding for global variable 'b'
    MetaQC : EQC: no visible binding for global variable 'g'
    MetaQC : EQC: no visible binding for global variable 'w'
    MetaQC : AQCg: no visible binding for global variable 'i'
    MetaQC : AQCp: no visible binding for global variable 'i'
    MetaQC : CQCg: no visible binding for global variable 'dat'
    MetaQC : CQCg: no visible binding for global variable 'pv'
    MetaQC : CQCg: no visible binding for global variable 'i'
    MetaQC : CQCp: no visible binding for global variable 'dat'
    MetaQC : CQCp: no visible binding for global variable 'pv'
    MetaQC : CQCp: no visible binding for global variable 'ii'
    MetaQC : CQCp: no visible binding for global variable 'jj'
    MetaQC : CQCp: no visible binding for global variable 'i'
    MetaQC : IQC: no visible binding for global variable 'i'
    MetaQC : .CalcDistOfStudies: no visible binding for global variable
     'ii'
    MetaQC : .CalcDistOfStudies: no visible binding for global variable
     'jj'
    MetaQC : .CalcScores: no visible binding for global variable 'd'
    requireAll: no visible binding for global variable 'biocLite'
    requireAll: no visible global function definition for 'biocLite'
Flavors: r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64